Fixed VCS watcher if statement logic

Improvements

• CoreDelete legacy permission module
• CoreClean up pending entry when question is aborted
• CoreRemove SIGHUP exit handler
• CoreEffectify PermissionNext and fix InstanceState ALS bug
• CoreInline branded ID schemas
• CoreRefactor QuestionService to use effects
• CoreEnsure that compaction message is tracked as agent initiated
• CoreIncrease default chunk timeout from 2 minutes to 5 minutes
• CoreFix lost sessions across worktrees and orphan branches@michaeldwan
• DesktopRemove open label from UI
• DesktopHandle multiline web paste in prompt composer